🌐 EMA Health Core Implementation Guide
0.10.0 - ci-build
🌐 EMA Health Core Implementation Guide - Local Development build (v0.10.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Active as of 2026-08-31 |
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<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet ema-vs-lab-organism</b></p><a name="ema-vs-lab-organism"> </a><a name="hcema-vs-lab-organism"> </a><ul><li>Include these codes as defined in <a href="http://www.snomed.org/"><code>http://snomed.info/sct</code></a><span title="Version is not explicitly stated. No matching Code System found"> version Not Stated (use latest from terminology server)</span><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href="http://snomed.info/id/91288006">91288006</a></td><td>Acinetobacter baumannii</td></tr><tr><td><a href="http://snomed.info/id/46369004">46369004</a></td><td>Actinomyces israelii</td></tr><tr><td><a href="http://snomed.info/id/66821001">66821001</a></td><td>Aspergillus flavus</td></tr><tr><td><a href="http://snomed.info/id/32684000">32684000</a></td><td>Aspergillus fumigatus</td></tr><tr><td><a href="http://snomed.info/id/89354002">89354002</a></td><td>Aspergillus niger</td></tr><tr><td><a href="http://snomed.info/id/84408007">84408007</a></td><td>Bacillus cereus</td></tr><tr><td><a href="http://snomed.info/id/83512007">83512007</a></td><td>Bacillus subtilis</td></tr><tr><td><a href="http://snomed.info/id/55247009">55247009</a></td><td>Bacteroides fragilis</td></tr><tr><td><a href="http://snomed.info/id/5247005">5247005</a></td><td>Bordetella pertussis</td></tr><tr><td><a href="http://snomed.info/id/76327009">76327009</a></td><td>Borrelia burgdorferi</td></tr><tr><td><a href="http://snomed.info/id/72829003">72829003</a></td><td>Brucella melitensis</td></tr><tr><td><a href="http://snomed.info/id/113669008">113669008</a></td><td>Burkholderia cepacia</td></tr><tr><td><a href="http://snomed.info/id/66543000">66543000</a></td><td>Campylobacter jejuni</td></tr><tr><td><a href="http://snomed.info/id/53326005">53326005</a></td><td>Candida albicans</td></tr><tr><td><a href="http://snomed.info/id/3491000146109">3491000146109</a></td><td>Candida auris</td></tr><tr><td><a href="http://snomed.info/id/61302002">61302002</a></td><td>Candida parapsilosis</td></tr><tr><td><a href="http://snomed.info/id/47885008">47885008</a></td><td>Candida tropicalis</td></tr><tr><td><a href="http://snomed.info/id/103514009">103514009</a></td><td>Chlamydophila pneumoniae</td></tr><tr><td><a href="http://snomed.info/id/63938009">63938009</a></td><td>Chlamydia trachomatis</td></tr><tr><td><a href="http://snomed.info/id/6265002">6265002</a></td><td>Citrobacter freundii</td></tr><tr><td><a href="http://snomed.info/id/114264004">114264004</a></td><td>Citrobacter koseri</td></tr><tr><td><a href="http://snomed.info/id/5933001">5933001</a></td><td>Clostridioides difficile</td></tr><tr><td><a href="http://snomed.info/id/8331005">8331005</a></td><td>Clostridium perfringens</td></tr><tr><td><a href="http://snomed.info/id/33101000">33101000</a></td><td>Clostridium septicum</td></tr><tr><td><a href="http://snomed.info/id/5851001">5851001</a></td><td>Corynebacterium diphtheriae</td></tr><tr><td><a href="http://snomed.info/id/63410006">63410006</a></td><td>Corynebacterium jeikeium</td></tr><tr><td><a href="http://snomed.info/id/22533000">22533000</a></td><td>Coxiella burnetii</td></tr><tr><td><a href="http://snomed.info/id/67168003">67168003</a></td><td>Cryptococcus neoformans</td></tr><tr><td><a href="http://snomed.info/id/39473003">39473003</a></td><td>Cutibacterium acnes</td></tr><tr><td><a href="http://snomed.info/id/14385002">14385002</a></td><td>Enterobacter cloacae</td></tr><tr><td><a href="http://snomed.info/id/78065002">78065002</a></td><td>Enterococcus faecalis</td></tr><tr><td><a href="http://snomed.info/id/90272000">90272000</a></td><td>Enterococcus faecium</td></tr><tr><td><a href="http://snomed.info/id/112283007">112283007</a></td><td>Escherichia coli</td></tr><tr><td><a href="http://snomed.info/id/51526001">51526001</a></td><td>Francisella tularensis</td></tr><tr><td><a href="http://snomed.info/id/46351008">46351008</a></td><td>Fusarium solani</td></tr><tr><td><a href="http://snomed.info/id/32763000">32763000</a></td><td>Fusobacterium nucleatum</td></tr><tr><td><a href="http://snomed.info/id/44470000">44470000</a></td><td>Haemophilus influenzae</td></tr><tr><td><a href="http://snomed.info/id/51593004">51593004</a></td><td>Haemophilus parainfluenzae</td></tr><tr><td><a href="http://snomed.info/id/80774000">80774000</a></td><td>Helicobacter pylori</td></tr><tr><td><a href="http://snomed.info/id/62592009">62592009</a></td><td>Klebsiella aerogenes</td></tr><tr><td><a href="http://snomed.info/id/40886007">40886007</a></td><td>Klebsiella oxytoca</td></tr><tr><td><a href="http://snomed.info/id/56415008">56415008</a></td><td>Klebsiella pneumoniae</td></tr><tr><td><a href="http://snomed.info/id/80897008">80897008</a></td><td>Legionella pneumophila</td></tr><tr><td><a href="http://snomed.info/id/116401006">116401006</a></td><td>Leptospira interrogans</td></tr><tr><td><a href="http://snomed.info/id/36094007">36094007</a></td><td>Listeria monocytogenes</td></tr><tr><td><a href="http://snomed.info/id/48299003">48299003</a></td><td>Micrococcus luteus</td></tr><tr><td><a href="http://snomed.info/id/24226003">24226003</a></td><td>Moraxella catarrhalis</td></tr><tr><td><a href="http://snomed.info/id/243301005">243301005</a></td><td>Morganella morganii</td></tr><tr><td><a href="http://snomed.info/id/113838007">113838007</a></td><td>Mycobacteroides abscessus</td></tr><tr><td><a href="http://snomed.info/id/58503001">58503001</a></td><td>Mycobacterium, avium-intracellulare group</td></tr><tr><td><a href="http://snomed.info/id/1507005">1507005</a></td><td>Mycobacterium kansasii</td></tr><tr><td><a href="http://snomed.info/id/113861009">113861009</a></td><td>Mycobacterium tuberculosis</td></tr><tr><td><a href="http://snomed.info/id/58720004">58720004</a></td><td>Mycoplasma pneumoniae</td></tr><tr><td><a href="http://snomed.info/id/444877006">444877006</a></td><td>Nakaseomyces glabratus</td></tr><tr><td><a href="http://snomed.info/id/68704007">68704007</a></td><td>Neisseria gonorrhoeae</td></tr><tr><td><a href="http://snomed.info/id/17872004">17872004</a></td><td>Neisseria meningitidis</td></tr><tr><td><a href="http://snomed.info/id/19217002">19217002</a></td><td>Peptostreptococcus anaerobius</td></tr><tr><td><a href="http://snomed.info/id/16452009">16452009</a></td><td>Pichia kudriavzevii</td></tr><tr><td><a href="http://snomed.info/id/114144004">114144004</a></td><td>Prevotella melaninogenica</td></tr><tr><td><a href="http://snomed.info/id/73457008">73457008</a></td><td>Proteus mirabilis</td></tr><tr><td><a href="http://snomed.info/id/45834001">45834001</a></td><td>Proteus vulgaris</td></tr><tr><td><a href="http://snomed.info/id/1445008">1445008</a></td><td>Providencia stuartii</td></tr><tr><td><a href="http://snomed.info/id/52499004">52499004</a></td><td>Pseudomonas aeruginosa</td></tr><tr><td><a href="http://snomed.info/id/39289003">39289003</a></td><td>Pseudomonas fluorescens</td></tr><tr><td><a href="http://snomed.info/id/87002009">87002009</a></td><td>Rhizopus arrhizus</td></tr><tr><td><a href="http://snomed.info/id/18054009">18054009</a></td><td>Rickettsia rickettsii</td></tr><tr><td><a href="http://snomed.info/id/58296003">58296003</a></td><td>Saccharomyces cerevisiae</td></tr><tr><td><a href="http://snomed.info/id/110378009">110378009</a></td><td>Salmonella enterica</td></tr><tr><td><a href="http://snomed.info/id/33522002">33522002</a></td><td>Serratia marcescens</td></tr><tr><td><a href="http://snomed.info/id/85729005">85729005</a></td><td>Shigella flexneri</td></tr><tr><td><a href="http://snomed.info/id/4298009">4298009</a></td><td>Shigella sonnei</td></tr><tr><td><a href="http://snomed.info/id/3092008">3092008</a></td><td>Staphylococcus aureus</td></tr><tr><td><a href="http://snomed.info/id/60875001">60875001</a></td><td>Staphylococcus epidermidis</td></tr><tr><td><a href="http://snomed.info/id/83452006">83452006</a></td><td>Staphylococcus haemolyticus</td></tr><tr><td><a href="http://snomed.info/id/44827007">44827007</a></td><td>Staphylococcus hominis</td></tr><tr><td><a href="http://snomed.info/id/103494005">103494005</a></td><td>Staphylococcus lugdunensis</td></tr><tr><td><a href="http://snomed.info/id/19743000">19743000</a></td><td>Staphylococcus saprophyticus</td></tr><tr><td><a href="http://snomed.info/id/113697002">113697002</a></td><td>Stenotrophomonas maltophilia</td></tr><tr><td><a href="http://snomed.info/id/43492007">43492007</a></td><td>Group B streptococcus</td></tr><tr><td><a href="http://snomed.info/id/44304009">44304009</a></td><td>Streptococcus anginosus</td></tr><tr><td><a href="http://snomed.info/id/113985000">113985000</a></td><td>Streptococcus gallolyticus</td></tr><tr><td><a href="http://snomed.info/id/9861002">9861002</a></td><td>Streptococcus pneumoniae</td></tr><tr><td><a href="http://snomed.info/id/80166006">80166006</a></td><td>Streptococcus pyogenes</td></tr><tr><td><a href="http://snomed.info/id/31703004">31703004</a></td><td>Streptococcus, viridans group</td></tr><tr><td><a href="http://snomed.info/id/72904005">72904005</a></td><td>Treponema pallidum</td></tr><tr><td><a href="http://snomed.info/id/65255000">65255000</a></td><td>Yersinia enterocolitica</td></tr></table></li></ul></div>
</text>
<url value="https://emahealth.io/fhir/core/ValueSet/ema-vs-lab-organism"/>
<version value="0.10.0"/>
<name value="EmaVsLabOrganism"/>
<title value="EMA — Organismos (microbiología)"/>
<status value="active"/>
<experimental value="false"/>
<date value="2026-08-31T21:14:26+00:00"/>
<publisher value="EMA Health SpA"/>
<contact>
<name value="EMA Health SpA"/>
<telecom>
<system value="url"/>
<value value="https://emahealth.io"/>
</telecom>
<telecom>
<system value="email"/>
<value value="contacto@emahealth.io"/>
</telecom>
</contact>
<description
value="Panel base de organismos clínicamente relevantes, en SNOMED CT. Es la semilla
que un laboratorio materializa y ajusta; el subconjunto por examen se resuelve
en la capa operativa (`ObservationDefinition.validCodedValueSet`)."/>
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<include>
<system value="http://snomed.info/sct"/>
<concept>
<code value="91288006"/>
<display value="Acinetobacter baumannii"/>
</concept>
<concept>
<code value="46369004"/>
<display value="Actinomyces israelii"/>
</concept>
<concept>
<code value="66821001"/>
<display value="Aspergillus flavus"/>
</concept>
<concept>
<code value="32684000"/>
<display value="Aspergillus fumigatus"/>
</concept>
<concept>
<code value="89354002"/>
<display value="Aspergillus niger"/>
</concept>
<concept>
<code value="84408007"/>
<display value="Bacillus cereus"/>
</concept>
<concept>
<code value="83512007"/>
<display value="Bacillus subtilis"/>
</concept>
<concept>
<code value="55247009"/>
<display value="Bacteroides fragilis"/>
</concept>
<concept>
<code value="5247005"/>
<display value="Bordetella pertussis"/>
</concept>
<concept>
<code value="76327009"/>
<display value="Borrelia burgdorferi"/>
</concept>
<concept>
<code value="72829003"/>
<display value="Brucella melitensis"/>
</concept>
<concept>
<code value="113669008"/>
<display value="Burkholderia cepacia"/>
</concept>
<concept>
<code value="66543000"/>
<display value="Campylobacter jejuni"/>
</concept>
<concept>
<code value="53326005"/>
<display value="Candida albicans"/>
</concept>
<concept>
<code value="3491000146109"/>
<display value="Candida auris"/>
</concept>
<concept>
<code value="61302002"/>
<display value="Candida parapsilosis"/>
</concept>
<concept>
<code value="47885008"/>
<display value="Candida tropicalis"/>
</concept>
<concept>
<code value="103514009"/>
<display value="Chlamydophila pneumoniae"/>
</concept>
<concept>
<code value="63938009"/>
<display value="Chlamydia trachomatis"/>
</concept>
<concept>
<code value="6265002"/>
<display value="Citrobacter freundii"/>
</concept>
<concept>
<code value="114264004"/>
<display value="Citrobacter koseri"/>
</concept>
<concept>
<code value="5933001"/>
<display value="Clostridioides difficile"/>
</concept>
<concept>
<code value="8331005"/>
<display value="Clostridium perfringens"/>
</concept>
<concept>
<code value="33101000"/>
<display value="Clostridium septicum"/>
</concept>
<concept>
<code value="5851001"/>
<display value="Corynebacterium diphtheriae"/>
</concept>
<concept>
<code value="63410006"/>
<display value="Corynebacterium jeikeium"/>
</concept>
<concept>
<code value="22533000"/>
<display value="Coxiella burnetii"/>
</concept>
<concept>
<code value="67168003"/>
<display value="Cryptococcus neoformans"/>
</concept>
<concept>
<code value="39473003"/>
<display value="Cutibacterium acnes"/>
</concept>
<concept>
<code value="14385002"/>
<display value="Enterobacter cloacae"/>
</concept>
<concept>
<code value="78065002"/>
<display value="Enterococcus faecalis"/>
</concept>
<concept>
<code value="90272000"/>
<display value="Enterococcus faecium"/>
</concept>
<concept>
<code value="112283007"/>
<display value="Escherichia coli"/>
</concept>
<concept>
<code value="51526001"/>
<display value="Francisella tularensis"/>
</concept>
<concept>
<code value="46351008"/>
<display value="Fusarium solani"/>
</concept>
<concept>
<code value="32763000"/>
<display value="Fusobacterium nucleatum"/>
</concept>
<concept>
<code value="44470000"/>
<display value="Haemophilus influenzae"/>
</concept>
<concept>
<code value="51593004"/>
<display value="Haemophilus parainfluenzae"/>
</concept>
<concept>
<code value="80774000"/>
<display value="Helicobacter pylori"/>
</concept>
<concept>
<code value="62592009"/>
<display value="Klebsiella aerogenes"/>
</concept>
<concept>
<code value="40886007"/>
<display value="Klebsiella oxytoca"/>
</concept>
<concept>
<code value="56415008"/>
<display value="Klebsiella pneumoniae"/>
</concept>
<concept>
<code value="80897008"/>
<display value="Legionella pneumophila"/>
</concept>
<concept>
<code value="116401006"/>
<display value="Leptospira interrogans"/>
</concept>
<concept>
<code value="36094007"/>
<display value="Listeria monocytogenes"/>
</concept>
<concept>
<code value="48299003"/>
<display value="Micrococcus luteus"/>
</concept>
<concept>
<code value="24226003"/>
<display value="Moraxella catarrhalis"/>
</concept>
<concept>
<code value="243301005"/>
<display value="Morganella morganii"/>
</concept>
<concept>
<code value="113838007"/>
<display value="Mycobacteroides abscessus"/>
</concept>
<concept>
<code value="58503001"/>
<display value="Mycobacterium, avium-intracellulare group"/>
</concept>
<concept>
<code value="1507005"/>
<display value="Mycobacterium kansasii"/>
</concept>
<concept>
<code value="113861009"/>
<display value="Mycobacterium tuberculosis"/>
</concept>
<concept>
<code value="58720004"/>
<display value="Mycoplasma pneumoniae"/>
</concept>
<concept>
<code value="444877006"/>
<display value="Nakaseomyces glabratus"/>
</concept>
<concept>
<code value="68704007"/>
<display value="Neisseria gonorrhoeae"/>
</concept>
<concept>
<code value="17872004"/>
<display value="Neisseria meningitidis"/>
</concept>
<concept>
<code value="19217002"/>
<display value="Peptostreptococcus anaerobius"/>
</concept>
<concept>
<code value="16452009"/>
<display value="Pichia kudriavzevii"/>
</concept>
<concept>
<code value="114144004"/>
<display value="Prevotella melaninogenica"/>
</concept>
<concept>
<code value="73457008"/>
<display value="Proteus mirabilis"/>
</concept>
<concept>
<code value="45834001"/>
<display value="Proteus vulgaris"/>
</concept>
<concept>
<code value="1445008"/>
<display value="Providencia stuartii"/>
</concept>
<concept>
<code value="52499004"/>
<display value="Pseudomonas aeruginosa"/>
</concept>
<concept>
<code value="39289003"/>
<display value="Pseudomonas fluorescens"/>
</concept>
<concept>
<code value="87002009"/>
<display value="Rhizopus arrhizus"/>
</concept>
<concept>
<code value="18054009"/>
<display value="Rickettsia rickettsii"/>
</concept>
<concept>
<code value="58296003"/>
<display value="Saccharomyces cerevisiae"/>
</concept>
<concept>
<code value="110378009"/>
<display value="Salmonella enterica"/>
</concept>
<concept>
<code value="33522002"/>
<display value="Serratia marcescens"/>
</concept>
<concept>
<code value="85729005"/>
<display value="Shigella flexneri"/>
</concept>
<concept>
<code value="4298009"/>
<display value="Shigella sonnei"/>
</concept>
<concept>
<code value="3092008"/>
<display value="Staphylococcus aureus"/>
</concept>
<concept>
<code value="60875001"/>
<display value="Staphylococcus epidermidis"/>
</concept>
<concept>
<code value="83452006"/>
<display value="Staphylococcus haemolyticus"/>
</concept>
<concept>
<code value="44827007"/>
<display value="Staphylococcus hominis"/>
</concept>
<concept>
<code value="103494005"/>
<display value="Staphylococcus lugdunensis"/>
</concept>
<concept>
<code value="19743000"/>
<display value="Staphylococcus saprophyticus"/>
</concept>
<concept>
<code value="113697002"/>
<display value="Stenotrophomonas maltophilia"/>
</concept>
<concept>
<code value="43492007"/>
<display value="Group B streptococcus"/>
</concept>
<concept>
<code value="44304009"/>
<display value="Streptococcus anginosus"/>
</concept>
<concept>
<code value="113985000"/>
<display value="Streptococcus gallolyticus"/>
</concept>
<concept>
<code value="9861002"/>
<display value="Streptococcus pneumoniae"/>
</concept>
<concept>
<code value="80166006"/>
<display value="Streptococcus pyogenes"/>
</concept>
<concept>
<code value="31703004"/>
<display value="Streptococcus, viridans group"/>
</concept>
<concept>
<code value="72904005"/>
<display value="Treponema pallidum"/>
</concept>
<concept>
<code value="65255000"/>
<display value="Yersinia enterocolitica"/>
</concept>
</include>
</compose>
</ValueSet>