{
  "resourceType" : "ValueSet",
  "id" : "ema-vs-lab-organism",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet ema-vs-lab-organism</b></p><a name=\"ema-vs-lab-organism\"> </a><a name=\"hcema-vs-lab-organism\"> </a><ul><li>Include these codes as defined in <a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://snomed.info/id/91288006\">91288006</a></td><td>Acinetobacter baumannii</td></tr><tr><td><a href=\"http://snomed.info/id/46369004\">46369004</a></td><td>Actinomyces israelii</td></tr><tr><td><a href=\"http://snomed.info/id/66821001\">66821001</a></td><td>Aspergillus flavus</td></tr><tr><td><a href=\"http://snomed.info/id/32684000\">32684000</a></td><td>Aspergillus fumigatus</td></tr><tr><td><a href=\"http://snomed.info/id/89354002\">89354002</a></td><td>Aspergillus niger</td></tr><tr><td><a href=\"http://snomed.info/id/84408007\">84408007</a></td><td>Bacillus cereus</td></tr><tr><td><a href=\"http://snomed.info/id/83512007\">83512007</a></td><td>Bacillus subtilis</td></tr><tr><td><a href=\"http://snomed.info/id/55247009\">55247009</a></td><td>Bacteroides fragilis</td></tr><tr><td><a href=\"http://snomed.info/id/5247005\">5247005</a></td><td>Bordetella pertussis</td></tr><tr><td><a href=\"http://snomed.info/id/76327009\">76327009</a></td><td>Borrelia burgdorferi</td></tr><tr><td><a href=\"http://snomed.info/id/72829003\">72829003</a></td><td>Brucella melitensis</td></tr><tr><td><a href=\"http://snomed.info/id/113669008\">113669008</a></td><td>Burkholderia cepacia</td></tr><tr><td><a href=\"http://snomed.info/id/66543000\">66543000</a></td><td>Campylobacter jejuni</td></tr><tr><td><a href=\"http://snomed.info/id/53326005\">53326005</a></td><td>Candida albicans</td></tr><tr><td><a href=\"http://snomed.info/id/3491000146109\">3491000146109</a></td><td>Candida auris</td></tr><tr><td><a href=\"http://snomed.info/id/61302002\">61302002</a></td><td>Candida parapsilosis</td></tr><tr><td><a href=\"http://snomed.info/id/47885008\">47885008</a></td><td>Candida tropicalis</td></tr><tr><td><a href=\"http://snomed.info/id/103514009\">103514009</a></td><td>Chlamydophila pneumoniae</td></tr><tr><td><a href=\"http://snomed.info/id/63938009\">63938009</a></td><td>Chlamydia trachomatis</td></tr><tr><td><a href=\"http://snomed.info/id/6265002\">6265002</a></td><td>Citrobacter freundii</td></tr><tr><td><a href=\"http://snomed.info/id/114264004\">114264004</a></td><td>Citrobacter koseri</td></tr><tr><td><a href=\"http://snomed.info/id/5933001\">5933001</a></td><td>Clostridioides difficile</td></tr><tr><td><a href=\"http://snomed.info/id/8331005\">8331005</a></td><td>Clostridium perfringens</td></tr><tr><td><a href=\"http://snomed.info/id/33101000\">33101000</a></td><td>Clostridium septicum</td></tr><tr><td><a href=\"http://snomed.info/id/5851001\">5851001</a></td><td>Corynebacterium diphtheriae</td></tr><tr><td><a href=\"http://snomed.info/id/63410006\">63410006</a></td><td>Corynebacterium jeikeium</td></tr><tr><td><a href=\"http://snomed.info/id/22533000\">22533000</a></td><td>Coxiella burnetii</td></tr><tr><td><a href=\"http://snomed.info/id/67168003\">67168003</a></td><td>Cryptococcus neoformans</td></tr><tr><td><a href=\"http://snomed.info/id/39473003\">39473003</a></td><td>Cutibacterium acnes</td></tr><tr><td><a href=\"http://snomed.info/id/14385002\">14385002</a></td><td>Enterobacter cloacae</td></tr><tr><td><a href=\"http://snomed.info/id/78065002\">78065002</a></td><td>Enterococcus faecalis</td></tr><tr><td><a href=\"http://snomed.info/id/90272000\">90272000</a></td><td>Enterococcus faecium</td></tr><tr><td><a href=\"http://snomed.info/id/112283007\">112283007</a></td><td>Escherichia coli</td></tr><tr><td><a href=\"http://snomed.info/id/51526001\">51526001</a></td><td>Francisella tularensis</td></tr><tr><td><a href=\"http://snomed.info/id/46351008\">46351008</a></td><td>Fusarium solani</td></tr><tr><td><a href=\"http://snomed.info/id/32763000\">32763000</a></td><td>Fusobacterium nucleatum</td></tr><tr><td><a href=\"http://snomed.info/id/44470000\">44470000</a></td><td>Haemophilus influenzae</td></tr><tr><td><a href=\"http://snomed.info/id/51593004\">51593004</a></td><td>Haemophilus parainfluenzae</td></tr><tr><td><a href=\"http://snomed.info/id/80774000\">80774000</a></td><td>Helicobacter pylori</td></tr><tr><td><a href=\"http://snomed.info/id/62592009\">62592009</a></td><td>Klebsiella aerogenes</td></tr><tr><td><a href=\"http://snomed.info/id/40886007\">40886007</a></td><td>Klebsiella oxytoca</td></tr><tr><td><a href=\"http://snomed.info/id/56415008\">56415008</a></td><td>Klebsiella pneumoniae</td></tr><tr><td><a href=\"http://snomed.info/id/80897008\">80897008</a></td><td>Legionella pneumophila</td></tr><tr><td><a href=\"http://snomed.info/id/116401006\">116401006</a></td><td>Leptospira interrogans</td></tr><tr><td><a href=\"http://snomed.info/id/36094007\">36094007</a></td><td>Listeria monocytogenes</td></tr><tr><td><a href=\"http://snomed.info/id/48299003\">48299003</a></td><td>Micrococcus luteus</td></tr><tr><td><a href=\"http://snomed.info/id/24226003\">24226003</a></td><td>Moraxella catarrhalis</td></tr><tr><td><a href=\"http://snomed.info/id/243301005\">243301005</a></td><td>Morganella morganii</td></tr><tr><td><a href=\"http://snomed.info/id/113838007\">113838007</a></td><td>Mycobacteroides abscessus</td></tr><tr><td><a href=\"http://snomed.info/id/58503001\">58503001</a></td><td>Mycobacterium, avium-intracellulare group</td></tr><tr><td><a href=\"http://snomed.info/id/1507005\">1507005</a></td><td>Mycobacterium kansasii</td></tr><tr><td><a href=\"http://snomed.info/id/113861009\">113861009</a></td><td>Mycobacterium tuberculosis</td></tr><tr><td><a href=\"http://snomed.info/id/58720004\">58720004</a></td><td>Mycoplasma pneumoniae</td></tr><tr><td><a href=\"http://snomed.info/id/444877006\">444877006</a></td><td>Nakaseomyces glabratus</td></tr><tr><td><a href=\"http://snomed.info/id/68704007\">68704007</a></td><td>Neisseria gonorrhoeae</td></tr><tr><td><a href=\"http://snomed.info/id/17872004\">17872004</a></td><td>Neisseria meningitidis</td></tr><tr><td><a href=\"http://snomed.info/id/19217002\">19217002</a></td><td>Peptostreptococcus anaerobius</td></tr><tr><td><a href=\"http://snomed.info/id/16452009\">16452009</a></td><td>Pichia kudriavzevii</td></tr><tr><td><a href=\"http://snomed.info/id/114144004\">114144004</a></td><td>Prevotella melaninogenica</td></tr><tr><td><a href=\"http://snomed.info/id/73457008\">73457008</a></td><td>Proteus mirabilis</td></tr><tr><td><a href=\"http://snomed.info/id/45834001\">45834001</a></td><td>Proteus vulgaris</td></tr><tr><td><a href=\"http://snomed.info/id/1445008\">1445008</a></td><td>Providencia stuartii</td></tr><tr><td><a href=\"http://snomed.info/id/52499004\">52499004</a></td><td>Pseudomonas aeruginosa</td></tr><tr><td><a href=\"http://snomed.info/id/39289003\">39289003</a></td><td>Pseudomonas fluorescens</td></tr><tr><td><a href=\"http://snomed.info/id/87002009\">87002009</a></td><td>Rhizopus arrhizus</td></tr><tr><td><a href=\"http://snomed.info/id/18054009\">18054009</a></td><td>Rickettsia rickettsii</td></tr><tr><td><a href=\"http://snomed.info/id/58296003\">58296003</a></td><td>Saccharomyces cerevisiae</td></tr><tr><td><a href=\"http://snomed.info/id/110378009\">110378009</a></td><td>Salmonella enterica</td></tr><tr><td><a href=\"http://snomed.info/id/33522002\">33522002</a></td><td>Serratia marcescens</td></tr><tr><td><a href=\"http://snomed.info/id/85729005\">85729005</a></td><td>Shigella flexneri</td></tr><tr><td><a href=\"http://snomed.info/id/4298009\">4298009</a></td><td>Shigella sonnei</td></tr><tr><td><a href=\"http://snomed.info/id/3092008\">3092008</a></td><td>Staphylococcus aureus</td></tr><tr><td><a href=\"http://snomed.info/id/60875001\">60875001</a></td><td>Staphylococcus epidermidis</td></tr><tr><td><a href=\"http://snomed.info/id/83452006\">83452006</a></td><td>Staphylococcus haemolyticus</td></tr><tr><td><a href=\"http://snomed.info/id/44827007\">44827007</a></td><td>Staphylococcus hominis</td></tr><tr><td><a href=\"http://snomed.info/id/103494005\">103494005</a></td><td>Staphylococcus lugdunensis</td></tr><tr><td><a href=\"http://snomed.info/id/19743000\">19743000</a></td><td>Staphylococcus saprophyticus</td></tr><tr><td><a href=\"http://snomed.info/id/113697002\">113697002</a></td><td>Stenotrophomonas maltophilia</td></tr><tr><td><a href=\"http://snomed.info/id/43492007\">43492007</a></td><td>Group B streptococcus</td></tr><tr><td><a href=\"http://snomed.info/id/44304009\">44304009</a></td><td>Streptococcus anginosus</td></tr><tr><td><a href=\"http://snomed.info/id/113985000\">113985000</a></td><td>Streptococcus gallolyticus</td></tr><tr><td><a href=\"http://snomed.info/id/9861002\">9861002</a></td><td>Streptococcus pneumoniae</td></tr><tr><td><a href=\"http://snomed.info/id/80166006\">80166006</a></td><td>Streptococcus pyogenes</td></tr><tr><td><a href=\"http://snomed.info/id/31703004\">31703004</a></td><td>Streptococcus, viridans group</td></tr><tr><td><a href=\"http://snomed.info/id/72904005\">72904005</a></td><td>Treponema pallidum</td></tr><tr><td><a href=\"http://snomed.info/id/65255000\">65255000</a></td><td>Yersinia enterocolitica</td></tr></table></li></ul></div>"
  },
  "url" : "https://emahealth.io/fhir/core/ValueSet/ema-vs-lab-organism",
  "version" : "0.10.0",
  "name" : "EmaVsLabOrganism",
  "title" : "EMA — Organismos (microbiología)",
  "status" : "active",
  "experimental" : false,
  "date" : "2026-08-31T21:14:26+00:00",
  "publisher" : "EMA Health SpA",
  "contact" : [{
    "name" : "EMA Health SpA",
    "telecom" : [{
      "system" : "url",
      "value" : "https://emahealth.io"
    },
    {
      "system" : "email",
      "value" : "contacto@emahealth.io"
    }]
  }],
  "description" : "Panel base de organismos clínicamente relevantes, en SNOMED CT. Es la semilla\nque un laboratorio materializa y ajusta; el subconjunto por examen se resuelve\nen la capa operativa (`ObservationDefinition.validCodedValueSet`).",
  "compose" : {
    "include" : [{
      "system" : "http://snomed.info/sct",
      "concept" : [{
        "code" : "91288006",
        "display" : "Acinetobacter baumannii"
      },
      {
        "code" : "46369004",
        "display" : "Actinomyces israelii"
      },
      {
        "code" : "66821001",
        "display" : "Aspergillus flavus"
      },
      {
        "code" : "32684000",
        "display" : "Aspergillus fumigatus"
      },
      {
        "code" : "89354002",
        "display" : "Aspergillus niger"
      },
      {
        "code" : "84408007",
        "display" : "Bacillus cereus"
      },
      {
        "code" : "83512007",
        "display" : "Bacillus subtilis"
      },
      {
        "code" : "55247009",
        "display" : "Bacteroides fragilis"
      },
      {
        "code" : "5247005",
        "display" : "Bordetella pertussis"
      },
      {
        "code" : "76327009",
        "display" : "Borrelia burgdorferi"
      },
      {
        "code" : "72829003",
        "display" : "Brucella melitensis"
      },
      {
        "code" : "113669008",
        "display" : "Burkholderia cepacia"
      },
      {
        "code" : "66543000",
        "display" : "Campylobacter jejuni"
      },
      {
        "code" : "53326005",
        "display" : "Candida albicans"
      },
      {
        "code" : "3491000146109",
        "display" : "Candida auris"
      },
      {
        "code" : "61302002",
        "display" : "Candida parapsilosis"
      },
      {
        "code" : "47885008",
        "display" : "Candida tropicalis"
      },
      {
        "code" : "103514009",
        "display" : "Chlamydophila pneumoniae"
      },
      {
        "code" : "63938009",
        "display" : "Chlamydia trachomatis"
      },
      {
        "code" : "6265002",
        "display" : "Citrobacter freundii"
      },
      {
        "code" : "114264004",
        "display" : "Citrobacter koseri"
      },
      {
        "code" : "5933001",
        "display" : "Clostridioides difficile"
      },
      {
        "code" : "8331005",
        "display" : "Clostridium perfringens"
      },
      {
        "code" : "33101000",
        "display" : "Clostridium septicum"
      },
      {
        "code" : "5851001",
        "display" : "Corynebacterium diphtheriae"
      },
      {
        "code" : "63410006",
        "display" : "Corynebacterium jeikeium"
      },
      {
        "code" : "22533000",
        "display" : "Coxiella burnetii"
      },
      {
        "code" : "67168003",
        "display" : "Cryptococcus neoformans"
      },
      {
        "code" : "39473003",
        "display" : "Cutibacterium acnes"
      },
      {
        "code" : "14385002",
        "display" : "Enterobacter cloacae"
      },
      {
        "code" : "78065002",
        "display" : "Enterococcus faecalis"
      },
      {
        "code" : "90272000",
        "display" : "Enterococcus faecium"
      },
      {
        "code" : "112283007",
        "display" : "Escherichia coli"
      },
      {
        "code" : "51526001",
        "display" : "Francisella tularensis"
      },
      {
        "code" : "46351008",
        "display" : "Fusarium solani"
      },
      {
        "code" : "32763000",
        "display" : "Fusobacterium nucleatum"
      },
      {
        "code" : "44470000",
        "display" : "Haemophilus influenzae"
      },
      {
        "code" : "51593004",
        "display" : "Haemophilus parainfluenzae"
      },
      {
        "code" : "80774000",
        "display" : "Helicobacter pylori"
      },
      {
        "code" : "62592009",
        "display" : "Klebsiella aerogenes"
      },
      {
        "code" : "40886007",
        "display" : "Klebsiella oxytoca"
      },
      {
        "code" : "56415008",
        "display" : "Klebsiella pneumoniae"
      },
      {
        "code" : "80897008",
        "display" : "Legionella pneumophila"
      },
      {
        "code" : "116401006",
        "display" : "Leptospira interrogans"
      },
      {
        "code" : "36094007",
        "display" : "Listeria monocytogenes"
      },
      {
        "code" : "48299003",
        "display" : "Micrococcus luteus"
      },
      {
        "code" : "24226003",
        "display" : "Moraxella catarrhalis"
      },
      {
        "code" : "243301005",
        "display" : "Morganella morganii"
      },
      {
        "code" : "113838007",
        "display" : "Mycobacteroides abscessus"
      },
      {
        "code" : "58503001",
        "display" : "Mycobacterium, avium-intracellulare group"
      },
      {
        "code" : "1507005",
        "display" : "Mycobacterium kansasii"
      },
      {
        "code" : "113861009",
        "display" : "Mycobacterium tuberculosis"
      },
      {
        "code" : "58720004",
        "display" : "Mycoplasma pneumoniae"
      },
      {
        "code" : "444877006",
        "display" : "Nakaseomyces glabratus"
      },
      {
        "code" : "68704007",
        "display" : "Neisseria gonorrhoeae"
      },
      {
        "code" : "17872004",
        "display" : "Neisseria meningitidis"
      },
      {
        "code" : "19217002",
        "display" : "Peptostreptococcus anaerobius"
      },
      {
        "code" : "16452009",
        "display" : "Pichia kudriavzevii"
      },
      {
        "code" : "114144004",
        "display" : "Prevotella melaninogenica"
      },
      {
        "code" : "73457008",
        "display" : "Proteus mirabilis"
      },
      {
        "code" : "45834001",
        "display" : "Proteus vulgaris"
      },
      {
        "code" : "1445008",
        "display" : "Providencia stuartii"
      },
      {
        "code" : "52499004",
        "display" : "Pseudomonas aeruginosa"
      },
      {
        "code" : "39289003",
        "display" : "Pseudomonas fluorescens"
      },
      {
        "code" : "87002009",
        "display" : "Rhizopus arrhizus"
      },
      {
        "code" : "18054009",
        "display" : "Rickettsia rickettsii"
      },
      {
        "code" : "58296003",
        "display" : "Saccharomyces cerevisiae"
      },
      {
        "code" : "110378009",
        "display" : "Salmonella enterica"
      },
      {
        "code" : "33522002",
        "display" : "Serratia marcescens"
      },
      {
        "code" : "85729005",
        "display" : "Shigella flexneri"
      },
      {
        "code" : "4298009",
        "display" : "Shigella sonnei"
      },
      {
        "code" : "3092008",
        "display" : "Staphylococcus aureus"
      },
      {
        "code" : "60875001",
        "display" : "Staphylococcus epidermidis"
      },
      {
        "code" : "83452006",
        "display" : "Staphylococcus haemolyticus"
      },
      {
        "code" : "44827007",
        "display" : "Staphylococcus hominis"
      },
      {
        "code" : "103494005",
        "display" : "Staphylococcus lugdunensis"
      },
      {
        "code" : "19743000",
        "display" : "Staphylococcus saprophyticus"
      },
      {
        "code" : "113697002",
        "display" : "Stenotrophomonas maltophilia"
      },
      {
        "code" : "43492007",
        "display" : "Group B streptococcus"
      },
      {
        "code" : "44304009",
        "display" : "Streptococcus anginosus"
      },
      {
        "code" : "113985000",
        "display" : "Streptococcus gallolyticus"
      },
      {
        "code" : "9861002",
        "display" : "Streptococcus pneumoniae"
      },
      {
        "code" : "80166006",
        "display" : "Streptococcus pyogenes"
      },
      {
        "code" : "31703004",
        "display" : "Streptococcus, viridans group"
      },
      {
        "code" : "72904005",
        "display" : "Treponema pallidum"
      },
      {
        "code" : "65255000",
        "display" : "Yersinia enterocolitica"
      }]
    }]
  }
}